Extension of the Fluctuation-Dissipation theorem to the physical aging of a model glass-forming liquid

We present evidence in favor of the possibility of treating an out-of-equilibrium supercooled simple liquid as a system in quasi-equilibrium. Two different temperatures, one controlled by the external bath and one internally selected by the system characterize the quasi-equilibrium state. The value of the internal temperature is explicitly calculated within the inherent structure thermodynamic formalism. We find that the internal temperature controls the relation between the response to an external perturbation and the long-time decay of fluctuations in the liquid.Comment: 5 pages, 3 figure

Role of the unstable directions in the equilibrium and aging dynamics of supercooled liquids

The connectivity of the potential energy landscape in supercooled atomic liquids is investigated through the calculation of the instantaneous normal modes spectrum and a detailed analysis of the unstable directions in configuration space. We confirm the hypothesis that the mode-coupling critical temperature is the $T$ at which the dynamics crosses over from free to activated exploration of configuration space. We also report the observed changes in the local connectivity of configuration space sampled during aging, following a temperature jump from a liquid to a glassy state.Comment: 5 pages, 3 figures. Phys. Rev. Lett., in pres

One-dimensional cluster growth and branching gels in colloidal systems with short-range depletion attraction and screened electrostatic repulsion

We report extensive numerical simulations of a simple model for charged colloidal particles in suspension with small non-adsorbing polymers. The chosen effective one-component interaction potential is composed of a short-range attractive part complemented by a Yukawa repulsive tail. We focus on the case where the screening length is comparable to the particle radius. Under these conditions, at low temperature, particles locally cluster into quasi one-dimensional aggregates which, via a branching mechanism, form a macroscopic percolating gel structure. We discuss gel formation and contrast it with the case of longer screening lengths, for which previous studies have shown that arrest is driven by the approach to a Yukawa glass of spherical clusters. We compare our results with recent experimental work on charged colloidal suspensions [A. I. Campbell {\it et al.} cond-mat/0412108, Phys. Rev. Lett. in press].Comment: 14 pages, 25 figure

Aging as dynamics in configuration space

The relaxation dynamics of many disordered systems, such as structural glasses, proteins, granular materials or spin glasses, is not completely frozen even at very low temperatures. This residual motion leads to a change of the properties of the material, a process commonly called aging. Despite recent advances in the theoretical description of such aging processes, the microscopic mechanisms leading to the aging dynamics are still a matter of dispute. In this Letter we investigate the aging dynamics of a simple glass former by means of molecular dynamics computer simulation. Using the concept of the inherent structure we give evidence that aging dynamics can be understood as a decrease of the effective configurational temperature T of the system. From our results we conclude that the equilibration process is faster when the system is quenched to T_c, the critical T of mode-coupling theory, and that thermodynamic concepts are useful to describe the out-of-equilibrium aging process.Comment: Latex 4 figure

Aging and Energy Landscapes: Application to Liquids and Glasses

The equation of state for a liquid in equilibrium, written in the potential energy landscape formalism, is generalized to describe out-of-equilibrium conditions. The hypothesis that during aging the system explores basins associated to equilibrium configurations is the key ingredient in the derivation. Theoretical predictions are successfully compared with data from molecular dynamics simulations of different aging processes, such as temperature and pressure jumps.Comment: RevTeX4, 4 pages, 5 eps figure

Evidence of a higher-order singularity in dense short-ranged attractive colloids

We study a model in which particles interact through a hard-core repulsion complemented by a short-ranged attractive potential, of the kind found in colloidal suspensions. Combining theoretical and numerical work we locate the line of higher-order glass transition singularities and its end-point -- named $A_4$ -- on the fluid-glass line. Close to the $A_4$ point, we detect logarithmic decay of density correlations and sub linear power-law increase of the mean square displacement, for time intervals up to four order of magnitudes. We establish the presence of the $A_4$ singularity by studying how the range of the potential affects the time-window where anomalous dynamics is observed.Comment: 4 pages, 4 figures, REVTE

Slow dynamics in a primitive tetrahedral network model

We report extensive Monte Carlo and event-driven molecular dynamics simulations of the fluid and liquid phase of a primitive model for silica recently introduced by Ford, Auerbach and Monson [J. Chem. Phys. 17, 8415 (2004)]. We evaluate the iso-diffusivity lines in the temperature-density plane to provide an indication of the shape of the glass transition line. Except for large densities, arrest is driven by the onset of the tetrahedral bonding pattern and the resulting dynamics is strong in the Angell's classification scheme. We compare structural and dynamic properties with corresponding results of two recently studied primitive models of network forming liquids -- a primitive model for water and a angular-constraint free model of four-coordinated particles -- to pin down the role of the geometric constraints associated to the bonding. Eventually we discuss the similarities between "glass" formation in network forming liquids and "gel" formation in colloidal dispersions of patchy particles.Comment: 9 pages, 10 figure

The seesaw between normal function and protein aggregation: How functional interactions may increase protein solubility

AbstractProtein aggregation has been studied for at least 3 decades, and many of the principles that regulate this event are relatively well understood. Here, however, we present a different perspective to explain why proteins aggregate: we argue that aggregation may occur as a side‐effect of the lack of one or more natural partners that, under physiologic conditions, would act as chaperones. This would explain why the same surfaces that have evolved for functional purposes are also those that favour aggregation. In the course of reviewing this field, we substantiate our hypothesis with three paradigmatic examples that argue for the generality of our proposal. An obvious corollary of this hypothesis is, of course, that targeting the physiological partners of a protein could be the most direct and specific approach to designing anti‐aggregation molecules. Our analysis may thus inform a different strategy for combating diseases of protein aggregation and misfolding